Spatial Transcriptomics

Hu, Yunfei., Lin, Zhenhan., Xie, Manfei., Yuan, Weiman., Li, Yikang., Rao, Mingxing., Liu, Yichen Henry., Shen, Wenjun., Zhang, Lu., & Zhou, Xin Maizie. (2025). MaskGraphene: an advanced framework for interpretable joint representation for multi-slice, multi-condition spatial transcriptomics. Genome Biology, 26(1), 380. https://doi.org/10.1186/s13059-025-03850-w Recent advances in spatial transcriptomics (ST),… Read More

Srivastava, Aruesha., Shaik, Neha., Lu, Yunrui., Chan, Matthew., Diallo, Alos B., Zavras, John P., Han, Serin., Punshon, Tracy., Jackson, Brian Phillip., Vahdat, Linda T., Liu, Xiaoying., Mittal, Vivek., Lau, Ken S., Gui, Jiang., Vaickus, Louis J., Hoopes, Jack., Kolling, Fred W., Perreard, Laurent., Marotti, Jonathan Douglas., & Levy,… Read More

Wang, Yu, Yang, Haichun, Deng, Ruining, Huo, Yuankai, Liu, Qi, Shyr, Yu, & Zhao, Shilin. (2025). StImage: A versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration. Briefings in Bioinformatics, 26(5), bbaf429. https://doi.org/10.1093/bib/bbaf429 Spatial transcriptomics (ST) is a… Read More

Shui, Lan, Maitra, Anirban, Yuan, Ying, Lau, Ken S., Kaur, Harsimran, Li, Liang, & Li, Ziyi. (2025). “PoweREST: Statistical power estimation for spatial transcriptomics experiments to detect differentially expressed genes between two conditions.” PLOS Computational Biology, 21(7), e1013293. https://doi.org/10.1371/journal.pcbi.1013293 Recent advances in spatial transcriptomics (ST)—a… Read More