Genomic Analysis

Islam, M.; Yang, Y.; Simmons, A.J.; Shah, V.M.; Musale, K.P.; Xu, Y.; Tasneem, N.; Chen, Z.; Trinh, L.T.; Molina, P.; Ramirez-Solano, M.A.; Sadien, I.D.; Dou, J.; Rolong, A.; Chen, K.; Magnuson, M.A.; Rathmell, J.C.; Macara, I.G.; Winton, D.J.; Liu, Q.; Zafar, H.; Kalhor, R.; Church, G.M.; Shrubsole, M.J.; Coffey,… Read More

Kaur, H.; Heiser, C.N.; McKinley, E.T.; Ventura-Antunes, L.; Harris, C.R.; Roland, J.T.; Farrow, M.A.; Selden, H.J.; Pingry, E.L.; Moore, J.F.; Ehrlich, L.I.R.; Shrubsole, M.J.; Spraggins, J.M.; Coffey, R.J.; Lau, K.S.; Vandekar, S.N. “Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology… Read More

Li, Jia, Simmons, Alan J., Hawkins, Caroline V., Chiron, Sophie, Ramirez-Solano, Marisol A., Tasneem, Naila, Kaur, Harsimran, Xu, Yanwen, Revetta, Frank, Vega, Paige N., Bao, Shunxing, Cui, Can, Tyree, Regina N., Raber, Larry W., Conner, Anna N., Pilat, Jennifer M., Jacobse, Justin, McNamara, Kara M., Allaman, Margaret M., Raffa, Gabriella… Read More

Hoang, Nhung, Sardaripour, Neda, Ramey, Grace D., Schilling, Kurt, Liao, Emily, Chen, Yiting, Park, Jee Hyun, Bledsoe, Xavier, Landman, Bennett A., Gamazon, Eric R., Benton, Mary Lauren, & Capra, John A., Rubinov, Mikail. (2024). Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank… Read More

Hu, Yunfei; Xie, Manfei; Li, Yikang; Rao, Mingxing; Shen, Wenjun; Luo, Can; Qin, Haoran; Baek, Jihoon; Zhou, Xin Maizie. “Benchmarking clustering, alignment, and integration methods for spatial transcriptomics.” Genome Biology, volume 25, Article number: 212 (2024). https://doi.org/10.1186/s13059-024-02665-w. Published: 09 August 2024. Understanding the complexities… Read More

Zhu, Junda; Zhou, Xin Maizie; Constantinidis, Christos; Salinas, Emilio; Stanford, Terrence R. “Parallel signatures of cognitive maturation in primate antisaccade performance and prefrontal activity.” iScience, Volume 27, Issue 8, 16 August 2024, 110488, https://doi.org/10.1016/j.isci.2024.110488. In this study, researchers examined how our ability to control… Read More

Zhang, Liting; Zhou, Xin Maizie; Mallory, Xian. “SCCNAInfer: a robust and accurate… Read More

Liu YH, Luo C, Golding SG, Ioffe JB, Zhou XM. Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data. Nat Commun. 2024 Mar 19;15(1):2447. doi: 10.1038/s41467-024-46614-z. PMID: 38503752; PMCID: PMC10951360. Researchers have systematically evaluated a range of tools designed to detect structural variants (SVs)… Read More