Deep Learning

Krishnan, Aravind R., Li, Thomas Z., Remedios, Lucas W., Kim, Michael E., Gao, Chenyu., Rudravaram, Gaurav., McMaster, Elyssa M., Saunders, Adam M., Bao, Shunxing., Xu, Kaiwen., Zuo, Lianrui., Sandler, Kim Lori., Maldonado, Fabien., Huo, Yuankai., & Landman, Bennett Allan. (2025). Multipath cycleGAN for harmonization of paired and unpaired… Read More

Guo, Junlin., Zimmer-Dauphinee, James R., Nieusma, Jordan M., Lu, Siqi., Liu, Quan., Deng, Ruining., Cui, Can., Yue, Jialin., Lin, Yizhe., Yao, Tianyuan., Xiong, Juming., Zhu, Junchao., Qu, Chongyu., Yang, Yuechen., Wilkes, Mitchell., Wang, Xiao., VanValkenburgh, Parker., Wernke, Steven A., & Huo, Yuankai. (2025). DeepAndes: A Self-Supervised Vision Foundation… Read More

Bayrak, Roza G.; Hansen, Colin B.; Salas, Jorge Alberto; Ahmed, Nafis; Lyu, Ilwoo; Mather, Mara M.; Huo, Yuankai; Chang, Catie E. (2025). DeepPhysioRecon: Tracing peripheral physiology in low frequency fMRI dynamics. Imaging Neuroscience, 3, IMAG.a.163. https://doi.org/10.1162/IMAG.a.163 Many brain studies that use functional magnetic resonance… Read More

Xiong, Juming, Deng, Ruining, Yue, Jialin, Lu, Siqi, Guo, Junlin, Lionts, Marilyn, Yao, Tianyuan, Cui, Can, Zhu, Junchao, & Qu, Chongyu. (2025). ZeroReg3D: A zero-shot registration pipeline for 3D consecutive histopathology image reconstruction. Journal of Medical Imaging, 12(4), 44002. https://doi.org/10.1117/1.JMI.12.4.044002 Histological analysis, which examines… Read More

Lu, Zhengyi, Liang, Hao, Lu, Ming, Wang, Xiao, Yan, Xinqiang, & Huo, Yuankai. (2025). “Fast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning.” Meta-Radiology, 3(3), 100166. https://doi.org/10.1016/j.metrad.2025.100166 Ultrahigh field (UHF) Magnetic Resonance Imaging (MRI) provides much stronger signals than standard MRI, allowing for… Read More

Cai, Leon Y., Lee, Ho Hin, Johnson, Graham W., Newlin, Nancy R., Ramadass, Karthik, Kim, Michael E., Archer, Derek B., Hohman, Timothy J., Jefferson, Angela L., Begnoche, J. Patrick, Boyd, Brian D., Taylor, Warren D., Morgan, Victoria L., Englot, Dario J., Nath, Vishwesh, Chotai, Silky, Barquero, Laura, D’Archangel,… Read More

Azher, Zarif L.; Srinivasan, Gokul; Yao, Keluo; Le, Minh-Khang; Lau, Ken S.; Kaur, Harsimran; Kolling, Fred; Vaickus, Louis; Lu, Xiaoying; Levy, Joshua J. “Mapping Three-Dimensional Tumor Heterogeneity through Deep Learning Inference of Spatial… Read More

Gao, Yuxiang; Duddu, Ravindra; Kolouri, Soheil; Gupta, Abhinav; Prabhakar, Pavana. “An inverse design framework for optimizing tensile strength of composite materials based on a CNN surrogate for the phase field fracture model.” Composites Part A: Applied Science and Manufacturing, vol. 192, 2025, 108758, https://doi.org/10.1016/j.compositesa.2025.108758… Read More

Abbasi, Ali; Nooralinejad, Parsa; Pirsiavash, Hamed; Kolouri, Soheil. “BrainWash: A Poisoning Attack to Forget in Continual Learning.” Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2024, pp. 24057-24067, https://doi.org/10.1109/CVPR52733.2024.02271.  Continual learning, a field within deep learning,… Read More

Dick, J., Nath, S., Peridis, C., Benjamin, E., Kolouri, S., & Soltoggio, A. (2024). “Statistical Context Detection for Deep Lifelong Reinforcement Learning.” Proceedings of Machine Learning Research, 274, 1013-1031. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85219511357&partnerID=40&md5=44236f24c54c2e13e04ef41cc8a97b90  Context detection involves identifying different tasks within a continuous stream of data. Read More