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Medicine - Cancer Biology E-Newsletter [Vanderbilt University]

September 2019

I imagine that all of us are wondering where the autumn foliage is as the temperatures still linger around the mid-90s at the end of September. I may need to prepare my son to trade-in his full-body Spider man Halloween costume for a bathing suit and goggles. Dressing up as an Olympic swimmer may be more weather appropriate!

I hope that you will all be able to attend the 19th Annual Retreat for Cancer Research on October 24th! Registration and abstract submission is open through September 30th.
https://redcap.vanderbilt.edu/surveys/?s=CYFEFNXX44.

Furthermore, The Program in Cancer Biology Science Hour Seminars are in full swing on Wednesday afternoons at 4 pm (898J PRB). It is important to participate in these great events to hear about the amazing cancer research going on at Vanderbilt and to support the work of our fantastic students and postdocs. I look forward to seeing you there!

Kim Dahlman

Getting to Know You…

Faculty Spotlight:

Shanna A Arnold, PhD, MSCI 
Research Assistant Professor, Pathology, Microbiology and Immunology
(Zijlstra Lab)

My graduate and postdoctoral work was focused on the mechanisms underlying tumor progression and metastasis. As a graduate student in the laboratory of Dr. Rolf Brekken, I utilized mouse models of pancreatic cancer to study the effects of the tumor microenvironment on local invasion and distant metastasis. As a result, I gained expertise in the areas of cancer biology, matricellular proteins, extracellular matrix, angiogenesis and tumor immunology. My postdoctoral laboratory, headed by Dr. Andries Zijlstra here at VUMC, studies the mechanisms by which the cell adhesion molecule, ALCAM, controls tumor cell migration and metastasis. My independent research has allowed me to transition into clinical and translational research with a particular focus on biomarker discovery and development. My studies are funded by both a 5-year VA Career Development Award and a 3-year intramural Clinical and Translational Science Award (CTSA) through VICTR.

Trainee Spotlight:

Verra Ngwa, MS, BS
Graduate Student (Chen Lab)

Verra received her B.S. in Biochemistry and M.S. in Chemical Sciences from Kennesaw State University in Georgia. After finishing her first year in IGP, she was selected for the Micro-environment in Cancer Training Program (MICTP). At the end of her appointment in the MICTP, Verra was awarded the Ruth Kirschstein NRSA pre-doctoral fellowship. Verra is interested in glutamine metabolism in breast and lung cancers. Her current project focuses on the role of vascular endothelial glutaminase (the enzyme which converts glutamine to glutamate) in tumor growth, metastasis and vessel normalization. Verra’s hypothesis is that loss of glutaminase in the endothelium decreases or converts abnormal tumor blood vessels into normal blood vessels thereby decreasing tumor growth and metastasis. Verra has also contributed to the Cancer Biology Student Association as the Graduate Student Representative for two years. When not in the lab, Verra spends time with her family enjoying her 14 month old daughter

 Staff Spotlight

Janene M. Pierce, BS
Lab Manager (Daniels Lab), Department of Ophthalmology and Visual Sciences

After graduating from Penn State University, Janene began her research career working in liver transplant and hepatocellular carcinoma.  This experience gave Janene the knowledge to further her understanding of cancer research in the laboratory of Dr. Bo Lovvorn studying pediatric kidney and liver cancers.  She worked on understanding the mechanisms of Wilms tumor development.  In 2014, Janene joined the laboratory of Dr. Anthony Daniels as a lab manager, studying different eye cancers, including ocular melanoma and retinoblastoma.  Her current research focuses on new animal models of local drug delivery for the treatment of these tumors, and on drug discovery to increase efficacy and minimize toxicity associated with currently-available therapies. “We are truly blessed in our lab to have an outstanding scientist and colleague like Janene, who is creative in study design and independent in experimental execution. She has an indefatiguable work ethic, a generous spirit in training younger lab members, and epitomizes integrity and collegiality,” said Anthony Daniels. When Janene is not working in the lab, she enjoys gardening, cooking, crocheting, and spending time with her husband Steven, who also works at Vanderbilt as a lab manager, and her son.

 


Eleven students earn Dean’s Award for Exceptional Achievement

Huge congratulations to the 11 students who earned the Dean’s Award for Exceptional Achievement for Advanced Students! This honor is bestowed upon third-year Ph.D. students in the School of Medicine whose research is original, significant, and rigorous; who have demonstrated excellence in research discovery; and who have mastered a discipline, as evidenced by classwork, qualifying exam, and performance in committee meetings. This year’s awardees are Demond Williams (Barbara Fingleton lab, Pharmacology), Margaret Axelrod (Justin Balko lab, Medicine), Manuel Castro (Chuck Sanders lab, Biochemistry), Matthew Cottam (Alyssa Hasty lab, MPB), Michael Doyle (James Crowe lab, Pediatrics), Azadeh Hadadianpour (Scott Smith lab, Medicine), Abigail Neininger (Dylan Burnette lab, CDB), James O’Connor (Andrea Page-McCaw lab, CDB), Alejandra Romero-Morales (Vivian Gama lab, CDB), Sheryl Vermudez (Jeff Conn and Colleen Niswender labs, Pharmacology), and Matthew Wleklinski (Bjorn Knollman lab, Medicine).


Please join us at the upcoming Program in Cancer Biology Science Hour Seminars located at Preston Research Building 898J, 4 PM on Wednesdays.
Each seminar consists of two lectures about the amazing cancer research ongoing at Vanderbilt and to support the work of our students and postdocs.

October 2
Kristin A. Kwakwa, Graduate Student, Sterling Laboratory
Deanna Edwards, PhD Postdoctoral Fellow, Chen Laboratory

October 9
Justine Sinnaeve
Graduate Student, Ihrie Laboratory
Scott A. Guelcher, Ph.D.
Professor of Chemical and Biomolecular Engineering
Director, Vanderbilt Center for Bone Biology

October 16
Michael W Irvin
Graduate Student, Lopez Lab
Laura C. Kim
Graduate Student, Chen Lab

October 23
Victoria Ng
Graduate Student, Lee Laboratory
Shan Wang, Ph.D.
Research Instructor of Medicine (Rheumatology&Immunology)

October 30
Aaron R. Lim
Graduate Student, Rathmell Laboratory
Sandra S. Zinkel, M.D./Ph.D.
Associate Professor of Medicine (Hematology/Oncology)
and Cell & Developmental Biology

November 6
Scott Haake, M.D.
Graduate Student, Zent Laboratory
Tatiana Novitskaya, M.D./ Ph.D.
Staff Scientist, Zijlstra Laboratory

November 13
Shawna K McLetchie
Graduate Student, Boothby Laboratory
Tae Kon Kim, M.D./Ph.D.
Assistant Professor of Medicine

New Faculty who have joined The Program in Cancer Biology

Tae Kon Kim, MD, PhD
Assistant Professor of Medicine, Division of Hematology/Oncology

Neil Osheroff, PhD
Professor of Biochemistry, Professor of Medicine,
John G. Coniglio Chair in Biochemistry
Director, Academy for Excellence in Education

Dana Brantley-Sieders, PhD
Assistant Professor of Medicine, Division of Rheumatology & Immunology

Paula Hurley, PhD
Assistant Professor of Medicine, Division of Hematology/Oncology

Yash Choksi, MD
Clinical Instructor
Department of Medicine and Division of Gastroenterology, Hepatology and Nutrition

Mission of the Program in Cancer Biology

To train new leaders in the field of Cancer Biology that will develop new knowledge that will translate into improved detection, diagnosis, prognosis, prevention, or treatment of cancer.

CALENDAR OF EVENTS @ VANDERBILT

VICC Seminars 

BRET Seminars

Discovery Lectures

Flexner Deans Lectures Series

Biomedical Seminar Series 

Discover Cancer Research Program

Pharmacology Seminars 

VICC Seminars past recordings of lectures 

CONFERENCES OF INTEREST

Vanderbilt‐Ingram Cancer Center   Annual Scientific Retreat Save the date April 22, 2020 “Impact of the Obesity Epidemic on Cancer”

CABTRAC 2019 – Cancer Biology Annual Retreat

Society for Immunotherapy of Cancer (SITC)
Cancer Immunotherapy Winter School registration

Gordon Research Conferences

52nd Annual Meeting of the Society for Leukocyte Biology

RECENT PUBLICATIONS:

SETD2 loss sensitizes cells to PI3Kβ and AKT inhibition
Terzo EA, Lim AR, et al
Oncotarget. 2019 Jan 18;10(6):647-659

Microenvironmental Metabolism Regulates Antitumor Immunity.
Ngwa VM, Edwards DN, Philip M, Chen J
Cancer Res. 2019 Aug 15; 79(16): 4003-4008

A case report of clonal EBV-like memory CD4+ T cell activation in fatal checkpoint inhibitor-induced encephalitis
Johnson DB, McDonnell WJ, Gonzalez-Ericsson PI, et al.
Nat Med. 2019 Aug;25(8):1243-1250

MDM2 antagonists overcome intrinsic resistance to CDK4/6 inhibition by inducing p21. 
Vilgelm AE, Saleh N, Shattuck-Brandt R, et al.
Sci Transl Med. 2019 Aug 14;11 (505)

Ornithine Decarboxylase in Macrophages Exacerbates Colitis and Promotes Colitis-Associated Colon Carcinogenesis by Impairing M1 Immune Responses
Singh K, Coburn LA, et al.
Cancer Res 20188 Aug 1;78(15)

Bcl2-expressing quiescent type B neural stem cells in the V-SVZ are resistant to concurrent temozolomide/X-irradiation
Cameron BD, Traver G, et al.
Stem Cells. 2019 Aug 20

Metabolic coordination of T cell quiescence and activation
Chapman NM, Boothby MR, Chi H.
Nat Rev Immunol. 2019 Aug 12

Associations between calcium and magnesium intake and the risk of incident gastric cancer, a prospective cohort analysis of the NIH-AARP Diet and Health Study
Shah SC, Dai Q, Zhu X, Peek RM, et al.
Int J Cancer. 2019 Aug 31

At the bench: Engineering the next generation of cancer vaccines
Shae D, Baljon JJ, Wehbe M, Becker KW, Sheehy TL, Wilson JT
J Leukoc Biol. 2019 Aug 20

Colorectal Cancer and Metabolism
Brown RE, Short SP, Williams CS
Curr Colorectal Cancer Rep. 2018 DEC;14 (6):226-241

Combination immunotherapy and radiotherapy causes an abscopal treatment response in a mouse model of castration resistant prostate cancer
Dudzinski SO, Cameron BD, Wang J, Rathmell JC, Giorgio TD, Kirschner A J Immunother Cancer. 2019 Aug 14;7 (1):218

FXR1 expression domain in Wilms tumor
Phelps HM, Pierce JM,Murphy AJ, Correa H, Qian J, Massion PP, Lovorn H
J Pediatr Surg. 2019 Jun;54 (6): 1198-1205

scRNABatchQC: Multi-samples quality control for single cell RNA-seq data
Liu Q, Sheng Q, Ping J, et al
Bioinformatics. 2019 Aug 2

International trends in the uptake of cancer risk reduction strategies in women with a BRCA1 or BRCA2 mutation
Metcalfe K, Eisen A, et al.
Br J Cancer. 2019 Jul;121 (1): 15-21

Identification of Targetable Recurrent MAP3K8 Rearrangements in Melanomas Lacking Known Driver Mutations
Lehmann BD, Shaver TM, Johnson DB, et al
Mol Cancer Res. 2019 Sep;17(9):1842-1853


Program in Cancer Biology 
Newest PhD:

David Len Elion presented “Harnessing RIG-I in the Tumor Microenvironment for Therapeutic Breast Cancer Treatment” as his Dissertaion Defense on August 21st. Congratulations!
( Rebecca S Cook lab)

Vanderbilt Promotions:

Jamye O’Neal has been promoted to the Manager of the Scientific Research Core Facility. Know your CORE Facilities at VUMC/VU

Dr. Babak Banan, an Instructor in the Department of Surgery, has joined the Fingleton lab to augment his surgical background with training in cancer biology research. Please read the recent paper that Dr. Banan (et al) published,  “Role of Bile Acids and GLP-1 in Mediating the Metabolic Improvements of Bariatric Surgery”


ImmersionHub Launched: Class of 2022 can submit plan proposals,
faculty can submit student opportunities

Know your Core Facilities at VUMC/VU

Learn about the Quantitative and Chemical Biology (QCB) Program.
Vito Quaranta (Biochemistry) and Tina Iverson (Pharmacology)

Vanderbilt’s Farmers Market

Events at Vanderbilt

VUMC News


Vanderbilt Summer Science  Academy

More than 150 undergraduate students from institutions across the nation  shared their research and discovery as part of the
17th Annual Student Research Symposium. 
VSSA participants used the symposium,held at the School of Engineering, as an opportunity to showcase their research accomplishments and the skills they learned during the summer while working in labs and  departments across Vanderbilt’s campus. Throughout the nine-week VSSA program, students completed a research project under the leadership of a research mentor and some students also had the opportunity to observe clinical patient care while spending time with residents and attending physicians. Students can apply to one of two programs: the Basic Sciences Programs for undergraduates interested in careers in research, as well as the Undergraduate Clinical Research Internship Program for undergraduates interested in practicing medicine. For more information about the Vanderbilt Summer Science Academy, visit medschool.vanderbilt.edu/vssa/.

The Meharry/Vanderbilt/Tennessee Cancer Partnership (MVTCP) and CURE funding sponsored 6 local high school students and 7 Undergraduate students at this years VSSA academy.

Vincent Buckman from Washington and Lee University is a Gates Millennium Scholar. He worked in the lab of Pierre Massion this summer and presented his poster at the symposium. His poster presentation was  “XCT Knockout Increases Radiation Sensitivity in an In Vitro Model of NSCLC”.

Simone Lee attends Cornell University and worked in Marianna Byndloss lab this summer. Her poster presentation was on, ” The role of Microbiota-Mediated Changes in Epithelia Function During Antibiotic-Associated Obesity.”

 


Brian Young
is currently attending Harvard University and worked in Young Kim’s lab, Department of Otolaryngology at VICC. His research this summer was with Organoids, the poster presentation was titled, “Immune Organoid Co-Culture Model of the Tumor Micro-Environment”

Antonio Glenn worked in the Biomedical engineering lab of Micheal King and his research entailed,”TRAIL-Coated Leukocytes to Kill Circulating Tumor Cells in Blood form Prostate Cancer Patients.” Antonio attends Vanderbilt University.

Anesha Walker assisted in the Engineering lab of Dr. Rafat. Anesha is a senior Biology major at Tennessee State University and the name of her project was, “Evaluating Neutrophil  Infiltration in Irradiated Tissues”.
.
Mariel Liggin is a Tennessee State University student, and she interned with us from Summer 2018 through Summer 2019. Her project title was: “Cancer Risks among CHEK2 & ATM Carriers: A Study Based on Participants in the Inherited Cancer Registry (ICARE). ”

Keanna Johnson from Tennessee State University worked in Julie Sterlings lab this summer on the project, “A Kinetic Model of Tumor-Induced Bone Disease.”

Our local High school students:

Kyra Thomas and Samaya Muhumad who joined Ken Lau lab’s this summer working in the area of micro fabrication for single-cell genomics.

Zulema Elvira returned again to our program this summer and worked in Rachelle Johnson’s lab, her work this summer was, ” The role of PTHrP in regulating dormancy genes.”

Jimmy Barajas worked in Julie Sterling’s lab learning about the  “Investigating macrophages and osteoclast differentiation in tumor-induced bone disease.”

Anastasia Shostak joined the Chemical and Biomolecular Engineering
department with Dr Rafat. Her research was in the area of  “Studying the Irradiated Micro environment using Extracellular Matrix Hydrogels. Evaluating Radiation Response in the Mammary Fat Pad”

Avery Robinson was in the Department of Pharmacology lab of Barbara Fingleton and the research project he worked on was, “Pro-metastatic targets of IL4 in breast cancer.”

It was our pleasure to host you at this summer’s academy and we wish you all success in your future careers as scientists!!


 

ImmersionHub has launched 

Vanderbilt students and faculty now have access to ImmersionHub, a project management system designed to track the progress of Immersion Vanderbilt projects and provide information about the recently launched undergraduate degree requirement.

Vanderbilt students and faculty now have access to ImmersionHub, a project management system designed to track the progress of Immersion Vanderbilt projects and provide information about the recently launched undergraduate degree requirement.

“The launch of ImmersionHub is exciting news,” said Vanessa Beasley, vice provost for academic affairs. “Now faculty will be able to advertise opportunities for students to get involved in their research and other projects, and students will be able to read about what’s available across campus and then submit their plans and track their progress.”

ImmersionHub provides two basic resources to undergraduate students pursuing the Immersion requirement and the faculty who are mentoring them through the process: a student plan proposal system and an opportunities database.

“The ImmersionHub system is a project management tool that will streamline the process students follow to submit plans, track their experiences, and eventually submit their final projects. The Office of Immersion Resources is energized by the ideas the students have already shared with us and is poised to advise and facilitate now that the system is launched,” said Carolyn Floyd, director of the Office of Immersion Resources.

Direct links and information about ImmersionHub can be found on the
Immersion Vanderbilt website


Predicting the outcome of MIMO systems

Click on the hyper link above for the detail information on the complexity of multi-input/multi-output (MIMO)
systems led by the labs of Carlos Lopez
(Biochemistry) and
Larry Marnett (Biochemistry) to use a systems biochemistry approach, combining
physiochemical modeling and information theory, to probe the complexity of cyclooxygenase 2 a llostery.

 


Xiao Ou Shu, MD, PhD, MPH, associate director for Global Health and co-leader of the Cancer Epidemiology Research Program at Vanderbilt-Ingram Cancer Center, and Wei Zheng, MD, PhD, director of the Vanderbilt Epidemiology Center and Anne Potter Wilson Chair in Medicine, received the medals in July. Shu led a team of Vanderbilt researchers on a program to build research capacity in Vietnam that is supported primarily by a grant from the National Cancer Institute’s (NCI) Center for Global Health. This grant is part of NCI initiative to create and support Regional Centers of Research Excellence for non-communicable diseases in low- and middle-income countries or regions. Shu is the lead principal investigator of this grant.

“We know that disease has no borders,” Shu said. “This research benefits America also because what we learn in another country can be transferred back to the U.S. populations, particularly for some lifestyle habits, such as diet and exercise, and genetic factors that are difficult to study in this country due to their low prevalence.”

She cited as an example a previous study she led on soy intake among breast cancer survivors that revealed soy products in the diet were associated with a reduced breast cancer recurrence rate even though they contain large amounts of isoflavones that bind to estrogen receptors in cells. Estrogen is a hormone that has been linked to cancer growth, particularly in breast cancer. The study showed that women who ate the most soy food, more than 11.83 mg isoflavones per day, had a 27% reduced rate for breast cancer recurrence compared to those who had the lowest intake. Such a study would have been difficult to conduct without using a Chinese-based population-based study because soy is not commonly consumed in the U.S. and consumption is low and difficult to measure, Shu said. This finding has led to a change of dietary guidelines from the American Cancer Society for breast cancer survivors.

“Non-communicable diseases have now become a problem for Vietnam as the society has transitioned from a low-income population to some extent a middle-income population now,” Zheng said. “Chronic diseases have become more common.”

The work in Vietnam began in 2015 when Shu and Zheng traveled there for a needs assessment. In 2017, Shu obtained a two-year NCI grant along with Thuan Van Tran, MD, director of the Vietnam National Cancer Hospital as the joint principal investigators.

Zheng said he welcomed the opportunity to help make a difference in Vietnam. “They need this kind of help and we have the capacity to help them,” he said. Shu said Vietnam has an opportunity to prevent some chronic diseases related to diet and lifestyle.

“You put out the fire before it gets aflame,” she said. “That’s important.”


 

FUNDING OPPORTUNITIES:

Continuing Umbrella of Research Experiences (CURE) Overview

 

 

Continuing Umbrella of Research Experiences (CURE) is a national research-training and career-development initiative that focuses on building and sustaining a pipeline of diverse cancer investigators. CURE provides training opportunities for underrepresented students and trainees across the academic continuum in order to diversify the workforce in cancer and/or cancer health disparities research.

The CURE program offers students from high school through graduate school, postdoctoral trainees, and early-stage investigators cancer research training and career development funding opportunities. You are encouraged to contact a CURE program director before applying for funding (see FOA and contact addresses below).
For more information about CURE, please visit their website at:
https://www.cancer.gov/about-nci/organization/crchd/diversity-training/cure.

CURE Funding Opportunities and Deadline Reminders

NCI Kirschstein-NRSA Individual Predoctoral Fellowship to Promote Diversity in Health-Related Research (F31) | Applications are due April 8, Aug. 8, and Dec. 8, 2019 | PA-19-196 

Diversity Research Supplements (New) | Apply between Feb. 1 – March. 30 and Oct. 1 – Dec. 1, 2019 | PA-18-586

Re-entry supplement FOA (New) | Apply between Feb. 1 – March. 30 and Oct.1 – Dec 1, 2019 | PA-18-592 (please use these updated Diversity Supplements Guidelines and Re-Entry Supplements Guidelines along with DS fact sheet to prepare your application).

NCI Mentored Research Scientist Development Award to Promote Diversity (K01) | Applications are due Feb.12, June 12, and Oct. 12, 2019 | PAR-18-364PAR-18-365

NCI Mentored Clinical Scientist Research Career Development Award to Promote Diversity (K08) | Applications are due Feb.12, June 12, and Oct. 12, 2019 | PAR-18-337PAR-18-336

NCI Transition Career Development Award to Promote Diversity (K22) | Applications are due Feb.12, June 12, and Oct. 12, 2019 | PAR-18-366PAR-18-367

Exploratory/Developmental Grants Program for Basic Research in Cancer Health Disparities (R21 Clinical Trial Not Allowed) | Applications are due June 19 and Nov. 19, 2019 | PAR-18-655

Exploratory Grant Award to Promote Workforce Diversity in Basic Cancer Research (R21 Clinical Trial Not Allowed) | Application are due June 19 and Nov.19, 2018 | PAR-18-731

Basic Research in Cancer Health Disparities (R01 Clinical Trial Not Allowed) | Applications are due June 19 and Nov. 19, 2019 | PAR-18-654

National Cancer Institute Youth Enjoy Science Research Education Program (R25) | Application are due September 25, 2019 | PAR-17-059

Contact the CURE Program Directors for more information.

Sara Hargrave, Ph.D. (Diversity Supplements); hargrave@nih.gov and/or CURE supplements@nih.gov
Alison Lin, Ph.D. (Diversity Supplements, R25 YES); lin@nih.gov and/or CURE supplements@nih.gov
Nicole McNeil Ford, Ph.D. (F31); mcneiln@mail.nih.gov
John Ojeifo, M.D., Ph.D. (K08); ojeifojo@mail.nih.gov
Elena Schwartz, Ph.D. (K01, K22, R21 WD); schwartz@nih.gov

NIH Guide
If you have not already done so, you are encouraged to subscribe to the NIH Guide email list, which provides a wealth of information on NIH grant programs.

New NIH F33 grant opens for NIGMS-funded PIs
This F33 is targeted toward experienced scientists who wish to make major changes in the direction of their research careers or who wish to broaden their scientific background by acquiring new research capabilities. Standard application dates apply to this grant.

Send us your news

Have a suggestion for a Cancer Biology newsletter item? Do you have an announcement or an upcoming event you want to share with the Cancer Biology community?

E-mail: kerry.w.vazquez@vanderbilt.edu


Newsletter header photo credit to Dr. Anna Vilgelm, “DNA Comets”.

Credit for the Wei Zheng & Xiao-ou Shu, article goes to Tom Wilemon and the Tennessean. Photo credit Susan Urmy. Clip art credit to Bing. NCI/NIH funding opportunities credit to NIH/NCI. 

 

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