{"id":790,"date":"2018-07-09T13:10:45","date_gmt":"2018-07-09T19:10:45","guid":{"rendered":"https:\/\/www.vanderbilt.edu\/cit\/?page_id=790"},"modified":"2025-04-09T12:03:55","modified_gmt":"2025-04-09T18:03:55","slug":"omics-data-analysis","status":"publish","type":"page","link":"https:\/\/www.vanderbilt.edu\/cit\/omics-data-analysis\/","title":{"rendered":"Data Analysis"},"content":{"rendered":"<div id='avia-messagebox-'style='background-color:#1e59b2; color:#ffffff; ' class='avia_message_box  avia-color-custom avia-size-large avia-icon_select-no avia-border-  avia-builder-el-0  el_before_av_one_full  avia-builder-el-first '><span class='avia_message_box_title' >Supporting You at Every Step!<\/span><div class='avia_message_box_content' ><p>The CIT offers highly flexible data acquisition and molecular omics data analysis approaches for global untargeted (hypothesis-generating) and\/or\u00a0targeted (hypothesis-driven) metabolomics analyses workflows.<\/p>\n<p>We are a full-service lab allowing you to avoid a long learning curve and get results faster.<\/p>\n<\/div><\/div>\n<div class=\"flex_column av_one_full  flex_column_div av-zero-column-padding first  avia-builder-el-1  el_after_av_notification  el_before_av_hr  \" style='border-radius:0px; '><section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><p>Our Center\u00a0has invested\u00a0heavily in licensing to provide personnel and collaborators access to next-generation software and small molecule libraries\/databases. Consequently, the CIT has ten\u00a0shared computer workstations for data acquisition, control, and analysis. Three of these workstations are dedicated to offline data visualization, processing, and analysis.<\/p>\n<p>For the purpose of data handling, our shared resource center has a dedicated full-time computer programmer\/ software analyst to assist in streamlining data analysis, developing in-house programs to support workflows, maintaining and updating all data workstations, and automating data storage backup of all instrumentation. Complementary, the CIT houses a 72 TB RAID storage bank where all data (original and metadata) is automatically archived onto backup servers to support the breadth of CIT activities.<\/p>\n<\/div><\/section><\/div><div  style='height:40px' class='hr hr-invisible   avia-builder-el-3  el_after_av_one_full  el_before_av_one_third '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><\/p>\n<div class=\"flex_column av_one_third  flex_column_div av-zero-column-padding first  avia-builder-el-4  el_after_av_hr  el_before_av_two_third  \" style='border-radius:0px; '><div  class='avia-icon-list-container   avia-builder-el-5  avia-builder-el-no-sibling '><ul class='avia-icon-list avia-icon-list-left av-iconlist-big avia_animate_when_almost_visible avia-iconlist-animate'>\n<li><div  class='iconlist_icon  avia-font-entypo-fontello'><span class='iconlist-char ' aria-hidden='true' data-av_icon='\ue808' data-av_iconfont='entypo-fontello'><\/span><\/div><article class=\"article-icon-entry \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='iconlist_content_wrap'><header class=\"entry-content-header\"><h4 class='av_iconlist_title iconlist_title   '  itemprop=\"headline\"  >Data Alignment &amp; Feature Detection<\/h4><\/header><div class='iconlist_content  '  itemprop=\"text\"  ><p>Application of\u00a0linear and nonlinear retention time corrections, peak deconvolution and isotope ratio grouping.<\/p>\n<\/div><\/div><footer class=\"entry-footer\"><\/footer><\/article><div class='iconlist-timeline'><\/div><\/li>\n<li><div  class='iconlist_icon  avia-font-entypo-fontello'><span class='iconlist-char ' aria-hidden='true' data-av_icon='\ue8c6' data-av_iconfont='entypo-fontello'><\/span><\/div><article class=\"article-icon-entry \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='iconlist_content_wrap'><header class=\"entry-content-header\"><h4 class='av_iconlist_title iconlist_title   '  itemprop=\"headline\"  >Feature Prioritization<\/h4><\/header><div class='iconlist_content  '  itemprop=\"text\"  ><p>Analysis and\/or Plotting Strategies:<\/p>\n<ul>\n<li>Principal Component Analysis<\/li>\n<li>Multivariate Statistical Analysis<\/li>\n<li>Heat Maps<\/li>\n<li>ANOVA\/t-test<\/li>\n<li>Self Organizing Map Analysis<\/li>\n<li>Volcano Plots<\/li>\n<li>Network Activity Prediction<\/li>\n<\/ul>\n<\/div><\/div><footer class=\"entry-footer\"><\/footer><\/article><div class='iconlist-timeline'><\/div><\/li>\n<li><div  class='iconlist_icon  avia-font-entypo-fontello'><span class='iconlist-char ' aria-hidden='true' data-av_icon='\ue8a8' data-av_iconfont='entypo-fontello'><\/span><\/div><article class=\"article-icon-entry \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='iconlist_content_wrap'><header class=\"entry-content-header\"><h4 class='av_iconlist_title iconlist_title   '  itemprop=\"headline\"  >Metabolite Identification<\/h4><\/header><div class='iconlist_content  '  itemprop=\"text\"  ><p>Unique feature to validated metabolite identification assignments.<\/p>\n<\/div><\/div><footer class=\"entry-footer\"><\/footer><\/article><div class='iconlist-timeline'><\/div><\/li>\n<\/ul><\/div><\/div>\n<div class=\"flex_column av_two_third  flex_column_div av-zero-column-padding   avia-builder-el-6  el_after_av_one_third  el_before_av_one_full  \" style='border-radius:0px; '><div  class='avia-image-container avia_animated_image avia_animate_when_almost_visible fade-in av-styling-    avia-builder-el-7  avia-builder-el-no-sibling  avia-align-center '  itemprop=\"image\" itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/ImageObject\"  ><div class='avia-image-container-inner'><div class='avia-image-overlay-wrap'><img class='wp-image-1651 avia-img-lazy-loading-not-1651 avia_image' src=\"https:\/\/cdn.vanderbilt.edu\/vu-URL\/wp-content\/uploads\/sites\/166\/2024\/01\/26150013\/MS-Data-Outputs.jpg\" alt='' title='MS Data Outputs' height=\"508\" width=\"750\"  itemprop=\"thumbnailUrl\" srcset=\"https:\/\/cdn.vanderbilt.edu\/vu-URL\/wp-content\/uploads\/sites\/166\/2024\/01\/26150013\/MS-Data-Outputs.jpg 750w, https:\/\/cdn.vanderbilt.edu\/vu-URL\/wp-content\/uploads\/sites\/166\/2024\/01\/26150013\/MS-Data-Outputs-300x203.jpg 300w, https:\/\/cdn.vanderbilt.edu\/vu-URL\/wp-content\/uploads\/sites\/166\/2024\/01\/26150013\/MS-Data-Outputs-705x478.jpg 705w\" sizes=\"(max-width: 750px) 100vw, 750px\" \/><\/div><\/div><\/div><\/div>\n<div class=\"flex_column av_one_full  flex_column_div av-zero-column-padding first  avia-builder-el-8  el_after_av_two_third  avia-builder-el-last  column-top-margin\" style='border-radius:0px; '><section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><p>The CIT utilizes numerous open source, custom developed in-house, and commercially acquired software packages for molecular omics analysis. In addition, these packages are populated with various open source and commercially available libraries for feature prioritization, identification, and validation.<\/p>\n<\/div><\/section><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":959,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/790"}],"collection":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/users\/959"}],"replies":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/comments?post=790"}],"version-history":[{"count":11,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/790\/revisions"}],"predecessor-version":[{"id":1608,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/790\/revisions\/1608"}],"wp:attachment":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/media?parent=790"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}